PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13052_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 484aa    MW: 53528.1 Da    PI: 5.1617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13052_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11315360454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er RR+++N++f  Lr  +P+       K++Ka+ L  A+ YI++L
  RrC13052_p1 315 NHVEAERLRREKLNQRFYALRATVPNV-----SKMDKASLLGDAICYINEL 360
                  799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-4528197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.279311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.21E-16314381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.17E-12314361No hitNo description
Gene3DG3DSA:4.10.280.104.4E-15315381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-9315360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MIDALMSSPS SSFWPPLSPA NPSPDIALQK RLQAVLNGTH EAWTYAIFWT PSYYDYSGES  60
VLKWGDGIYK GEEADKTRRR RPRRTTMISD EALPMVYDEN DVEVSETDTE WFYVVSMAAS  120
FGSETGLPGK AFATYKPVWV TGSDQILGSG CDRAKQGGAS GLRTIVCIPL DNGVLELGST  180
VEIQQNSDLM NKIRVVFSFE GSRDFSGDPS SNSFPLFSTQ LESGGGSSTV TVNANRYPNP  240
VYAQTVNFGT EEALHSPNRS YPGQMQNDDG ELLHAVEDMD GSDHSDIEAA TVARENMQKK  300
KRGRKLANGR KEPLNHVEAE RLRREKLNQR FYALRATVPN VSKMDKASLL GDAICYINEL  360
KLRAENAESE RNAIRIELNK LREEIAGQNA ISSVPRGGQN ASEIETASID VKVFGCDVMV  420
RLESSKTNHP AARLMSAFMD LDVELNHASI SVIHDLMVQQ ATVKMGSRMY TQEQLQAMLV  480
SKIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A1e-40271998194Transcription factor MYC3
4rs9_A1e-40271998194Transcription factor MYC3
4rqw_B1e-40271998194Transcription factor MYC3
4rqw_A1e-40271998194Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614723.10.0PREDICTED: transcription factor bHLH28-like
SwissprotQ9LUK71e-164BH028_ARATH; Transcription factor bHLH28
TrEMBLA0A0D2ZTS50.0A0A0D2ZTS5_BRAOL; Uncharacterized protein
STRINGBra017523.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139531624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.11e-156NACL-inducible gene 1